PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123599001
Common NameGSBRNA2T00123599001, LOC106434942
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 225aa    MW: 23588.8 Da    PI: 6.925
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123599001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.41.8e-41151151100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll+++pe++r da+ s+++eA+ar+rdP+yG+v++i +lqqq+ +
  GSBRNA2T00123599001  15 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLQHVPEHKRADAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVS 104
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l++el++++++
  GSBRNA2T00123599001 105 LQTELSYVQAH 115
                          *******9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.6514116IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-4015113IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSSSGSPGSS CGGGPCGACK FLRRKCVAGC IFAPYFDSEQ GAAHFAAVHK VFGASNVSKL  60
LQHVPEHKRA DAVVSICFEA QARLRDPIYG CVSHIVSLQQ QVVSLQTELS YVQAHLATLE  120
LPQPPPAPVT SSGSPPPLSI SDLPTITPSL YELSPIFEPM SSTWTMQQQP RPFDHLFGVP  180
SSSTIGGSSE LQALARDFLH GGQIPADLPP PGTGGSAPTV VKRE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111504.11e-162PREDICTED: LOB domain-containing protein 30
RefseqXP_013731251.11e-162PREDICTED: LOB domain-containing protein 30
SwissprotO813231e-117LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A078F1H71e-162A0A078F1H7_BRANA; BnaCnng02510D protein
TrEMBLM4F8B11e-162M4F8B1_BRARP; Uncharacterized protein
STRINGBra037323.1-P1e-161(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.11e-103LBD family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]